SMTL ID : 8t4e.1

Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- LEU- LYS- GLU- PRO- VAL- HIS- GLY- VAL: Transframe peptide(Non-covalent)

ILE-LEU-LYS-GLU-PRO-VAL-HIS-GLY-VAL.1: 21 residues within 4Å: Chain A: E.242, D.246, L.305, W.308, Y.309, R.312, Y.408, V.460 Chain B: G.211, F.214, T.215, M.218, L.266, N.269, V.270, R.273, R.373, L.377, R.380, Y.428, I.429 17 PLIP interactions: 10 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:F.214, B:L.266, B:L.377, A:L.305, A:L.305, A:V.460 Hydrogen bonds: B:N.269, B:R.273, B:R.273, B:R.373, A:E.242, A:D.246, A:Y.309, A:R.312 Salt bridges: B:R.210, B:R.273, B:R.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J. et al., Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV. To Be Published

Release Date

2024-06-19

Peptides

Antigen peptide transporter 1: A
Antigen peptide transporter 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Antigen peptide transporter 1

Antigen peptide transporter 2

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