SMTL ID : 8t4r.1

RAG2-PHD finger in complex with H3K4tBuNle peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.40, C.44, D.45, V.46, H.76, C.79 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.40, A:C.44, A:H.76, A:C.79 ZN.2: 5 residues within 4Å: Chain A: C.67, H.69, H.73, C.99, H.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:H.73, A:C.99, A:H.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Travis, C.R. et al., Trimethyllysine Reader Proteins Exhibit Widespread Charge-Agnostic Binding via Different Mechanisms to Cationic and Neutral Ligands. J.Am.Chem.Soc. (2024)

Release Date

2024-02-14

Peptides

V(D)J recombination-activating protein 2: A
H3 histone peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

V(D)J recombination-activating protein 2

H3 histone peptide