SMTL ID : 8t5a.1

HIV-1 Integrase Catalytic Core Domain (CCD) F185H/Y99H/A128T Mutant Complexed with STP03-0404

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x WBV: (2S)-tert-butoxy{4-(4-chlorophenyl)-2,3,6-trimethyl-1-[(1-methyl-1H-pyrazol-4-yl)methyl]-1H-pyrrolo[2,3-b]pyridin-5-yl}acetic acid(Non-covalent)

WBV.1: 15 residues within 4Å: Chain A: Q.113, A.114, E.115, H.116, K.118, T.119 Chain B: Q.40, A.43, H.44, L.47, T.69, T.70, T.73, A.74, W.77 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:Q.40, B:H.44, B:T.70, A:T.119 Hydrogen bonds: A:E.115, A:H.116, A:T.119, A:T.119 Salt bridges: A:H.116 WBV.2: 15 residues within 4Å: Chain A: Q.40, A.43, H.44, L.47, T.69, T.70, T.73, A.74, W.77 Chain B: Q.113, A.114, E.115, H.116, K.118, T.119 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:Q.40, A:H.44, A:T.70, B:T.119 Hydrogen bonds: B:E.115, B:H.116, B:T.119, B:T.119 Salt bridges: B:H.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dinh, T. et al., The structural and mechanistic bases for the viral resistance to allosteric HIV-1 integrase inhibitor pirmitegravir. Biorxiv (2024)

Release Date

2024-06-19

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase