SMTL ID : 8t68.1

Crystal Structure of the SET Domain of Human Histone-Lysine N-Methyltransferase SUV420H1 in complex with RQ3-111

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.214, C.258, C.260, C.263 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.214, A:C.258, A:C.260, A:C.263

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 17 residues within 4Å: Chain A: H.37, Y.142, S.144, E.145, G.148, A.149, F.189, A.208, F.209, I.210, N.211, H.212, Y.246, F.251, C.258, E.259, C.260 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.144, A:S.144, A:E.145, A:A.149, A:A.149, A:F.189, A:N.211, A:H.212, A:H.212, A:E.259, A:E.259 Water bridges: A:H.37, A:E.145, A:E.145 Salt bridges: A:H.37 pi-Stacking: A:Y.142, A:Y.142, A:F.251

1 x ZKI: 6,7-dichloro-N-[(3R)-oxolan-3-yl]-4-(pyridin-4-yl)phthalazin-1-amine(Non-covalent)

ZKI.3: 12 residues within 4Å: Chain A: G.168, S.190, V.191, M.192, W.203, A.207, A.208, F.220, S.222, A.228, Y.246, F.250 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.203, A:W.203, A:F.220, A:F.220, A:Y.246 Hydrogen bonds: A:S.222 Water bridges: A:S.190 pi-Stacking: A:W.203, A:W.203, A:W.203, A:F.220, A:F.220 Halogen bonds: A:A.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, H. et al., Crystal Structure of the SET Domain of Human Histone-Lysine N-Methyltransferase SUV420H1 in complex with RQ3-111. To be published

Release Date

2024-11-27

Peptides

Histone-lysine N-methyltransferase KMT5B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase KMT5B