SMTL ID : 8t7d.1 (1 other biounit)

Crystal structure of wild type IDH1 bound to compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.44 Å

Oligo State

homo-dimer

Ligands

2 x ZT3: N-(4-tert-butylphenyl)-7,8-dimethyl-5,11-dihydro-6H-pyrido[2,3-b][1,5]benzodiazepine-6-carboxamide

ZT3.1: 8 residues within 4Å: Chain A: R.109, A.111, I.113, R.119, W.124, I.128, I.130, M.291 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.111, A:I.113, A:R.119, A:W.124, A:I.130, A:I.130 Hydrogen bonds: A:I.128, A:I.128 pi-Stacking: A:W.124 ZT3.2: 11 residues within 4Å: Chain B: R.109, A.111, I.113, L.120, W.124, I.128, I.130, V.255, M.259, W.267, M.291 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.111, B:I.113, B:W.124, B:W.124, B:V.255, B:W.267, B:W.267 Hydrogen bonds: B:I.128, B:I.128 pi-Stacking: B:W.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCoy, M.A. et al., Mechanistic and Biostructural Studies of Mutant IDH1. To Be Published

Release Date

2024-08-28

Peptides

Isocitrate dehydrogenase [NADP] cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Isocitrate dehydrogenase [NADP] cytoplasmic

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