SMTL ID : 8t7s.1

SpRYmer bound to NAC PAM DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: D.10, E.762 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.10, A:E.762 MG.2: 3 residues within 4Å: Chain A: D.10, S.15, H.983 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.10, A:H.983 MG.3: 6 residues within 4Å: Chain A: D.839, H.840, N.863, K.866 Chain C: G.22 Chain F: T.23 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.839 MG.4: 4 residues within 4Å: Chain A: E.57, T.1102 Chain B: U.64, A.65 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.57, A:E.57 MG.5: 3 residues within 4Å: Chain F: T.34, G.35, C.36 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hibshman, G.N. et al., Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun (2024)

Release Date

2024-05-01

Peptides

CRISPR-associated endonuclease Cas9/Csn1: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
G

CRISPR-associated endonuclease Cas9/Csn1

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