SMTL ID : 8t9v.1

RTA-RUNT-59 complex structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZJT: (9aP)-7-fluoro-4,5-dihydronaphtho[1,2-b]thiophene-2-carboxylic acid

ZJT.1: 10 residues within 4Å: Chain A: Y.180, L.229, Q.230, R.231, R.232, F.237, V.239, I.244, L.245, I.248 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.229, A:F.237, A:F.237, A:I.244, A:I.248 Hydrogen bonds: A:R.232 Water bridges: A:N.233 Salt bridges: A:R.232

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 5 residues within 4Å: Chain A: E.124, Q.125, G.128, N.129, L.130 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Structure-based design and optimization of a new class of small molecule inhibitors targeting the P-stalk binding pocket of ricin. Bioorg.Med.Chem. (2024)

Release Date

2024-05-01

Peptides

Ricin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ricin

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