SMTL ID : 8tad.1

RTA in complex with inhibitor RUNT-206

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.76 Å

Oligo State

monomer

Ligands

1 x ZXJ: (9aM)-5,5-dimethyl-4,5-dihydronaphtho[1,2-b]thiophene-2-carboxylic acid

ZXJ.1: 9 residues within 4Å: Chain A: Y.180, L.204, L.229, Q.230, R.231, R.232, F.237, I.244, I.248 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.180, A:Y.180, A:L.204, A:R.232, A:F.237, A:I.244, A:I.248 Hydrogen bonds: A:R.232 Salt bridges: A:R.231, A:R.232

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: A.115, F.116, R.122 Ligand excluded by PLIP

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.3: 5 residues within 4Å: Chain A: E.124, Q.125, G.128, N.129, L.130 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Structure-based design and optimization of a new class of small molecule inhibitors targeting the P-stalk binding pocket of ricin. Bioorg.Med.Chem. (2024)

Release Date

2024-05-01

Peptides

Ricin A chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ricin A chain