SMTL ID : 8tci.1

Crystal structure of DNMT3C-DNMT3L in complex with CGG DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: F.12, D.13, G.14, I.15, T.17, S.35, E.36, V.37, D.58, I.59, R.60, G.79, P.81, L.102, R.263, S.264, W.265 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:I.15, A:V.37, A:C.38, A:D.58, A:I.59, A:R.60, A:R.263, A:R.263, A:W.265 pi-Stacking: A:F.12 SAH.2: 17 residues within 4Å: Chain D: F.12, D.13, G.14, I.15, T.17, S.35, E.36, V.37, C.38, D.58, I.59, G.79, P.81, L.102, R.263, S.264, W.265 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:D.13, D:I.15, D:T.17, D:D.58, D:I.59, D:G.79, D:W.265 pi-Stacking: D:F.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khudaverdyan, N. et al., The structure of DNA methyltransferase DNMT3C reveals an activity-tuning mechanism for DNA methylation. J.Biol.Chem. (2024)

Release Date

2024-08-14

Peptides

DNA (cytosine-5)-methyltransferase 3C: AD
DNA (cytosine-5)-methyltransferase 3-like: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

C
C

DNA (cytosine-5)-methyltransferase 3C

DNA (cytosine-5)-methyltransferase 3-like