SMTL ID : 8tcm.1

Crystal Structure of modified HIV reverse transcriptase p51 domain (FPC1) with picric acid and Xanthene-1,3,6,8-tetrol bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

3 x TNF: PICRIC ACID(Non-covalent)

TNF.1: 14 residues within 4Å: Chain A: K.29, V.30, K.31, Q.32, N.63, P.64, Y.65, N.66, T.140, P.149, G.150, R.152 Ligands: TNF.2, TNF.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.140 TNF.2: 12 residues within 4Å: Chain A: K.31, Q.32, T.140, P.142, S.143, N.146, E.147, T.148, P.149, G.150 Ligands: TNF.1, TNF.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.31, A:N.146 TNF.3: 5 residues within 4Å: Chain A: K.29, K.31, P.149 Ligands: TNF.1, TNF.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.29

2 x ZQT: 9H-xanthene-1,3,6,8-tetrol(Non-covalent)

ZQT.4: 8 residues within 4Å: Chain A: N.90, G.161, K.163, P.166, M.193, D.194, T.334, W.335 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:K.163, A:P.166, A:M.193, A:W.335 Hydrogen bonds: A:N.90, A:D.194 Water bridges: A:W.162, A:D.194, A:I.336, A:I.336, A:I.336 ZQT.5: 10 residues within 4Å: Chain A: H.8, I.46, E.49, M.50, E.53, K.55, W.80, R.81, K.82, F.125 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.46 Hydrogen bonds: A:E.53, A:K.82 pi-Stacking: A:F.125 pi-Cation interactions: A:H.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kirby, T.W. et al., Targeting the Structural Maturation Pathway of HIV-1 Reverse Transcriptase. Biomolecules (2023)

Release Date

2024-07-17

Peptides

p51 subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

p51 subunit

Related Entries With Identical Sequence