SMTL ID : 8tco.1

HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain C: N.162, E.166, Q.167, G.168, G.170, N.171, R.327 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.168, C:R.327 NAG-NAG-BMA.3: 6 residues within 4Å: Chain C: F.172, Y.215, N.219, K.247 Chain F: L.112 Chain G: F.72 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.247

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain C: D.429, E.430, N.433, W.463, W.464 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: Y.62, N.63 Chain E: G.55, G.56, R.58 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.56, E:R.58 NAG.5: 2 residues within 4Å: Chain C: N.350, A.353 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.350 NAG.6: 3 residues within 4Å: Chain C: N.242, K.245 Chain G: H.112 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain C: N.454, T.457 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.454 NAG.8: 3 residues within 4Å: Chain C: N.367, T.369, Y.371 No protein-ligand interaction detected (PLIP) NAG.9: 4 residues within 4Å: Chain C: S.105, I.106, N.130, A.133 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.106 NAG.10: 3 residues within 4Å: Chain C: N.157, R.161, I.373 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.373 Hydrogen bonds: C:R.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zehner, M. et al., Single-cell analysis of memory B cells from top neutralizers reveals multiple sites of vulnerability within HCMV Trimer and Pentamer. Immunity (2023)

Release Date

2023-08-09

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Envelope glycoprotein O: C
CS4tt1p1_E3K Fab light chain: D
CS4tt1p1_E3K Fab heavy chain: E
CS2it1p2_F7K Fab heavy chain: F
CS2it1p2_F7K Fab light chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Envelope glycoprotein H

Envelope glycoprotein L

Envelope glycoprotein O

CS4tt1p1_E3K Fab light chain

CS4tt1p1_E3K Fab heavy chain

CS2it1p2_F7K Fab heavy chain

CS2it1p2_F7K Fab light chain