- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x ZR6: 2-methyl-3-(2-oxoimidazolidin-1-yl)benzoic acid(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: G.31, Q.32, L.33, K.93
- Ligands: ZR6.1
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.32, A:L.33
- Water bridges: A:G.31, A:G.31, A:A.34
- Salt bridges: A:K.93
SO4.4: 5 residues within 4Å:- Chain A: Q.32, L.61, A.62, T.63
- Chain D: R.222
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Salt bridges: D:R.222
- Hydrogen bonds: A:Q.32, A:A.62, A:T.63
- Water bridges: A:T.63
SO4.5: 5 residues within 4Å:- Chain B: G.31, Q.32, L.33, K.93
- Ligands: ZR6.2
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.32, B:L.33
- Water bridges: B:A.34
- Salt bridges: B:K.93
SO4.7: 5 residues within 4Å:- Chain C: G.31, Q.32, L.33, K.93
- Ligands: ZR6.8
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Q.32, C:L.33
- Water bridges: C:G.31, C:K.93
- Salt bridges: C:K.93
SO4.9: 5 residues within 4Å:- Chain D: G.31, Q.32, L.33, K.93
- Ligands: ZR6.6
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:Q.32, D:L.33
- Water bridges: D:G.31, D:G.31
- Salt bridges: D:K.93
SO4.11: 5 residues within 4Å:- Chain E: G.31, Q.32, L.33, K.93
- Ligands: ZR6.21
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Q.32, E:L.33
- Water bridges: E:A.34
- Salt bridges: E:K.93
SO4.14: 5 residues within 4Å:- Chain F: G.31, Q.32, L.33, K.93
- Ligands: ZR6.12
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:Q.32, F:L.33
- Water bridges: F:G.31, F:G.31, F:A.34
- Salt bridges: F:K.93
SO4.15: 5 residues within 4Å:- Chain F: Q.32, L.61, A.62, T.63
- Chain I: R.222
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain I- Hydrogen bonds: F:Q.32, F:A.62, F:T.63
- Salt bridges: I:R.222
SO4.16: 5 residues within 4Å:- Chain G: G.31, Q.32, L.33, K.93
- Ligands: ZR6.13
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:Q.32, G:L.33
- Water bridges: G:A.34
- Salt bridges: G:K.93
SO4.18: 5 residues within 4Å:- Chain H: G.31, Q.32, L.33, K.93
- Ligands: ZR6.19
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:Q.32, H:L.33
- Water bridges: H:G.31, H:K.93
- Salt bridges: H:K.93
SO4.20: 5 residues within 4Å:- Chain I: G.31, Q.32, L.33, K.93
- Ligands: ZR6.17
5 PLIP interactions:5 interactions with chain I- Hydrogen bonds: I:Q.32, I:L.33
- Water bridges: I:G.31, I:G.31
- Salt bridges: I:K.93
SO4.22: 5 residues within 4Å:- Chain J: G.31, Q.32, L.33, K.93
- Ligands: ZR6.10
4 PLIP interactions:4 interactions with chain J- Hydrogen bonds: J:Q.32, J:L.33
- Water bridges: J:A.34
- Salt bridges: J:K.93
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meeks, K.R. et al., Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography. J.Chem.Inf.Model. (2024)
- Release Date
- 2024-03-06
- Peptides
- Pyrroline-5-carboxylate reductase 1, mitochondrial: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.94 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x ZR6: 2-methyl-3-(2-oxoimidazolidin-1-yl)benzoic acid(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meeks, K.R. et al., Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography. J.Chem.Inf.Model. (2024)
- Release Date
- 2024-03-06
- Peptides
- Pyrroline-5-carboxylate reductase 1, mitochondrial: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E