- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 10 x UJP: (2R)-thiolane-2-carboxylic acid(Non-covalent)
UJP.2: 8 residues within 4Å:- Chain A: V.253, S.255, A.259, T.260
- Chain B: T.193, G.197, S.198
- Ligands: NAI.4
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:S.255, A:A.259, A:T.260, A:T.260, A:T.260
- Water bridges: A:S.255, A:G.258, A:I.261
UJP.5: 8 residues within 4Å:- Chain A: T.193, G.197, S.198
- Chain B: V.253, S.255, A.259, T.260
- Ligands: NAI.1
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:V.253
- Hydrogen bonds: B:S.255, B:S.255, B:A.259, B:T.260
- Water bridges: B:S.255, B:G.258, B:I.261
UJP.8: 9 residues within 4Å:- Chain C: V.253, S.255, G.258, A.259, T.260
- Chain D: T.193, G.197, S.198
- Ligands: NAI.9
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:S.255, C:A.259, C:T.260, C:T.260, C:T.260
- Water bridges: C:S.255, C:G.258, C:I.261
UJP.10: 8 residues within 4Å:- Chain C: T.193, G.197, S.198
- Chain D: V.253, S.255, A.259, T.260
- Ligands: NAI.7
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:S.255, D:S.255, D:A.259, D:T.260
- Water bridges: D:S.255, D:G.258, D:I.261
UJP.13: 8 residues within 4Å:- Chain E: T.193, G.197, S.198
- Chain J: V.253, S.255, A.259, T.260
- Ligands: NAI.25
7 PLIP interactions:7 interactions with chain J- Hydrogen bonds: J:S.255, J:S.255, J:A.259, J:T.260
- Water bridges: J:S.255, J:G.258, J:I.261
UJP.15: 8 residues within 4Å:- Chain F: V.253, S.255, A.259, T.260
- Chain G: T.193, G.197, S.198
- Ligands: NAI.17
7 PLIP interactions:7 interactions with chain F- Hydrogen bonds: F:S.255, F:A.259, F:T.260, F:T.260
- Water bridges: F:S.255, F:G.258, F:I.261
UJP.18: 8 residues within 4Å:- Chain F: T.193, G.197, S.198
- Chain G: V.253, S.255, A.259, T.260
- Ligands: NAI.14
9 PLIP interactions:9 interactions with chain G- Hydrophobic interactions: G:V.253
- Hydrogen bonds: G:S.255, G:S.255, G:A.259, G:T.260, G:T.260
- Water bridges: G:S.255, G:G.258, G:I.261
UJP.21: 9 residues within 4Å:- Chain H: V.253, S.255, G.258, A.259, T.260
- Chain I: T.193, G.197, S.198
- Ligands: NAI.22
7 PLIP interactions:7 interactions with chain H- Hydrogen bonds: H:S.255, H:A.259, H:T.260, H:T.260
- Water bridges: H:S.255, H:G.258, H:I.261
UJP.23: 8 residues within 4Å:- Chain H: T.193, G.197, S.198
- Chain I: V.253, S.255, A.259, T.260
- Ligands: NAI.20
8 PLIP interactions:8 interactions with chain I- Hydrogen bonds: I:S.255, I:S.255, I:A.259, I:T.260, I:T.260
- Water bridges: I:S.255, I:G.258, I:I.261
UJP.26: 8 residues within 4Å:- Chain E: V.253, S.255, A.259, T.260
- Chain J: T.193, G.197, S.198
- Ligands: NAI.12
8 PLIP interactions:8 interactions with chain E- Hydrogen bonds: E:S.255, E:S.255, E:A.259, E:T.260, E:T.260
- Water bridges: E:S.255, E:G.258, E:I.261
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: S.242, E.243, Q.244
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.243, A:Q.244
SO4.6: 4 residues within 4Å:- Chain B: H.241, S.242, E.243, Q.244
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.241, B:E.243, B:Q.244
SO4.11: 3 residues within 4Å:- Chain D: S.242, E.243, Q.244
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.242, D:E.243, D:Q.244
SO4.16: 3 residues within 4Å:- Chain F: S.242, E.243, Q.244
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:E.243, F:Q.244
SO4.19: 4 residues within 4Å:- Chain G: H.241, S.242, E.243, Q.244
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:H.241, G:E.243, G:Q.244
SO4.24: 3 residues within 4Å:- Chain I: S.242, E.243, Q.244
3 PLIP interactions:3 interactions with chain I- Hydrogen bonds: I:S.242, I:E.243, I:Q.244
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meeks, K.R. et al., Screening a knowledge-based library of low molecular weight compounds against the proline biosynthetic enzyme 1-pyrroline-5-carboxylate 1 (PYCR1). Protein Sci. (2024)
- Release Date
- 2024-07-03
- Peptides
- Pyrroline-5-carboxylate reductase 1, mitochondrial: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.81 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 10 x UJP: (2R)-thiolane-2-carboxylic acid(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meeks, K.R. et al., Screening a knowledge-based library of low molecular weight compounds against the proline biosynthetic enzyme 1-pyrroline-5-carboxylate 1 (PYCR1). Protein Sci. (2024)
- Release Date
- 2024-07-03
- Peptides
- Pyrroline-5-carboxylate reductase 1, mitochondrial: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E