- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x LHV: (2S)-2-hydroxy-3-methylbutanoic acid(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: Q.32, L.61, A.62, T.63
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.32, A:A.62, A:T.63
- Water bridges: A:T.63
SO4.4: 3 residues within 4Å:- Chain B: S.242, E.243, Q.244
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.241, B:E.243, B:Q.244
SO4.6: 3 residues within 4Å:- Chain C: G.31, Q.32, L.33
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Q.32, C:Q.32, C:L.33
- Water bridges: C:G.31
SO4.9: 4 residues within 4Å:- Chain A: R.222
- Chain D: L.61, A.62, T.63
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:A.62, D:T.63
- Water bridges: D:Q.32, D:Q.32
SO4.11: 4 residues within 4Å:- Chain E: G.31, Q.32, L.33, K.93
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Q.32, E:L.33
- Water bridges: E:A.34
- Salt bridges: E:K.93
SO4.13: 4 residues within 4Å:- Chain F: Q.32, L.61, A.62, T.63
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Q.32, F:A.62, F:T.63
SO4.15: 3 residues within 4Å:- Chain G: S.242, E.243, Q.244
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:H.241, G:E.243, G:Q.244
SO4.17: 3 residues within 4Å:- Chain H: G.31, Q.32, L.33
4 PLIP interactions:4 interactions with chain H- Hydrogen bonds: H:Q.32, H:Q.32, H:L.33
- Water bridges: H:G.31
SO4.20: 4 residues within 4Å:- Chain F: R.222
- Chain I: L.61, A.62, T.63
4 PLIP interactions:4 interactions with chain I- Hydrogen bonds: I:A.62, I:T.63
- Water bridges: I:Q.32, I:Q.32
SO4.22: 4 residues within 4Å:- Chain J: G.31, Q.32, L.33, K.93
4 PLIP interactions:4 interactions with chain J- Hydrogen bonds: J:Q.32, J:L.33
- Water bridges: J:A.34
- Salt bridges: J:K.93
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 5 residues within 4Å:- Chain D: Q.248, D.251, N.252
- Chain H: R.221, R.222
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain H- Hydrogen bonds: D:Q.248
- Water bridges: H:R.221
PEG.19: 5 residues within 4Å:- Chain C: R.221, R.222
- Chain I: Q.248, D.251, N.252
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain I- Water bridges: C:R.221
- Hydrogen bonds: I:Q.248
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meeks, K.R. et al., Screening a knowledge-based library of low molecular weight compounds against the proline biosynthetic enzyme 1-pyrroline-5-carboxylate 1 (PYCR1). Protein Sci. (2024)
- Release Date
- 2024-07-03
- Peptides
- Pyrroline-5-carboxylate reductase 1, mitochondrial: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x LHV: (2S)-2-hydroxy-3-methylbutanoic acid(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Meeks, K.R. et al., Screening a knowledge-based library of low molecular weight compounds against the proline biosynthetic enzyme 1-pyrroline-5-carboxylate 1 (PYCR1). Protein Sci. (2024)
- Release Date
- 2024-07-03
- Peptides
- Pyrroline-5-carboxylate reductase 1, mitochondrial: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
AG
BH
CI
DJ
E