SMTL ID : 8tfe.1

Crystal structure of Fab fragment of anti-HCV E2 antibody (CBH-7)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

hetero-2-2-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 12 residues within 4Å: Chain A: A.51, T.70, F.73, T.75, K.77, R.117, G.118, Y.119, I.120, Y.121, G.122 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.70, A:K.77 Water bridges: A:T.70, A:T.75 EDO.2: 11 residues within 4Å: Chain A: K.77, R.117, Y.121, G.122, S.123 Chain B: S.112, Y.113, S.114, F.115, L.117 Ligands: EDO.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.117, A:R.117, A:G.122 Water bridges: A:K.77 EDO.3: 9 residues within 4Å: Chain B: Q.58, K.66, L.68, V.79, P.80, R.82, F.83, E.102, D.103 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.58, B:Q.58, B:R.82, B:D.103, B:D.103 Water bridges: B:K.60 EDO.5: 9 residues within 4Å: Chain D: Q.58, K.66, L.68, V.79, P.80, R.82, F.83, E.102, D.103 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.58, D:Q.58, D:R.82, D:D.103

1 x FLC: CITRATE ANION(Non-covalent)

FLC.4: 7 residues within 4Å: Chain B: R.163, E.164, A.165, E.182, S.183, V.184, L.196 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.184 Hydrogen bonds: B:R.163, B:A.165, B:E.182 Water bridges: B:V.184 Salt bridges: B:R.163, B:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shahid, S. et al., Crystal structure of Fab fragment of anti-HCV E2 antibody (CBH-7). To Be Published

Release Date

2024-07-17

Peptides

CBH-7 Heavy chain: AC
CBH-7 Light chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

CBH-7 Heavy chain

CBH-7 Light chain

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