- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 36 x MG: MAGNESIUM ION(Non-covalent)
- 12 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
P3S.4: 26 residues within 4Å:- Chain A: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, R.344, E.356, R.358
- Chain B: D.77, S.80
- Ligands: MG.1, MG.2, MG.3, ADP.5
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:G.264, A:G.264, A:H.268, A:R.339, A:R.339, A:R.344, A:R.358, A:R.358, B:D.77
- Salt bridges: A:H.268, A:R.321
P3S.9: 26 residues within 4Å:- Chain B: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, R.344, E.356, R.358
- Chain C: D.77, S.80
- Ligands: MG.6, MG.7, MG.8, ADP.10
11 PLIP interactions:10 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:E.327
- Hydrogen bonds: B:E.157, B:G.264, B:H.268, B:R.339, B:R.339, B:R.358, B:R.358, C:D.77
- Salt bridges: B:H.268, B:R.321
P3S.14: 25 residues within 4Å:- Chain C: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, E.327, A.328, R.339, R.344, E.356, R.358
- Chain D: D.77, S.80
- Ligands: MG.11, MG.12, MG.13, ADP.15
14 PLIP interactions:13 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:E.155, C:Q.217, C:N.263, C:G.264, C:G.264, C:H.268, C:R.339, C:R.339, C:R.344, C:R.358, C:R.358, D:D.77
- Salt bridges: C:H.268, C:R.321
P3S.19: 24 residues within 4Å:- Chain D: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, R.358
- Chain E: D.77, S.80
- Ligands: MG.16, MG.17, MG.18, ADP.20
10 PLIP interactions:1 interactions with chain E, 9 interactions with chain D- Hydrogen bonds: E:D.77, D:Q.217, D:N.263, D:G.264, D:H.268, D:R.339, D:R.358
- Hydrophobic interactions: D:E.327
- Salt bridges: D:H.268, D:R.321
P3S.21: 26 residues within 4Å:- Chain E: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, R.344, E.356, R.358
- Chain F: D.77, S.80
- Ligands: ADP.22, MG.23, MG.24, MG.25
11 PLIP interactions:10 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:E.155, E:E.157, E:Q.217, E:G.264, E:R.339, E:R.339, E:R.358, E:R.358, F:D.77
- Salt bridges: E:H.268, E:R.321
P3S.26: 23 residues within 4Å:- Chain A: D.77, S.80
- Chain F: E.155, E.157, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, E.327, A.328, R.339, E.356, R.358
- Ligands: ADP.27, MG.28, MG.29, MG.30
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:E.327
- Hydrogen bonds: F:G.264, F:G.264, F:H.268, F:R.339, F:R.358, F:R.358
- Salt bridges: F:H.268, F:R.321
P3S.31: 25 residues within 4Å:- Chain G: E.155, E.157, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, R.344, E.356, R.358
- Chain L: D.77, S.80
- Ligands: ADP.32, MG.33, MG.34, MG.35
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:N.263, G:H.268, G:R.339, G:R.339, G:R.344, G:R.358, G:R.358
- Salt bridges: G:H.268, G:R.321
P3S.36: 25 residues within 4Å:- Chain G: D.77, S.80
- Chain H: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, R.344, R.358
- Ligands: ADP.37, MG.38, MG.39, MG.40
7 PLIP interactions:7 interactions with chain H- Hydrogen bonds: H:G.264, H:R.339, H:R.339, H:R.358, H:R.358
- Salt bridges: H:H.268, H:R.321
P3S.41: 25 residues within 4Å:- Chain H: D.77, S.80
- Chain I: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, E.356, R.358
- Ligands: ADP.42, MG.43, MG.44, MG.45
7 PLIP interactions:7 interactions with chain I- Hydrogen bonds: I:G.264, I:H.268, I:R.339, I:R.339, I:R.358
- Salt bridges: I:H.268, I:R.321
P3S.46: 26 residues within 4Å:- Chain I: D.77, S.80
- Chain J: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, R.344, E.356, R.358
- Ligands: ADP.47, MG.48, MG.49, MG.50
10 PLIP interactions:10 interactions with chain J- Hydrophobic interactions: J:E.327
- Hydrogen bonds: J:E.157, J:G.264, J:G.264, J:R.339, J:R.339, J:R.358, J:R.358
- Salt bridges: J:H.268, J:R.321
P3S.51: 25 residues within 4Å:- Chain J: D.77, S.80
- Chain K: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, Y.326, E.327, A.328, R.339, E.356, R.358
- Ligands: ADP.52, MG.53, MG.54, MG.55
13 PLIP interactions:13 interactions with chain K- Hydrophobic interactions: K:E.327
- Hydrogen bonds: K:E.155, K:E.157, K:Q.217, K:N.263, K:G.264, K:H.268, K:R.339, K:R.339, K:R.358, K:R.358
- Salt bridges: K:H.268, K:R.321
P3S.56: 24 residues within 4Å:- Chain K: D.77, S.80
- Chain L: E.155, E.157, Y.179, E.212, V.213, Q.217, E.219, N.263, G.264, S.265, G.266, H.268, R.321, E.327, A.328, R.339, E.356, R.358
- Ligands: ADP.57, MG.58, MG.59, MG.60
11 PLIP interactions:11 interactions with chain L- Hydrophobic interactions: L:E.327
- Hydrogen bonds: L:Q.217, L:N.263, L:H.268, L:A.328, L:R.339, L:R.339, L:R.358, L:R.358
- Salt bridges: L:H.268, L:R.321
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.5: 25 residues within 4Å:- Chain A: N.151, V.152, G.153, E.155, E.207, E.219, D.221, F.222, R.223, F.224, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: MG.2, MG.3, P3S.4
16 PLIP interactions:16 interactions with chain A- Hydrogen bonds: A:G.153, A:G.153, A:E.155, A:E.207, A:E.207, A:F.224, A:N.279, A:G.352, A:R.354, A:R.354, A:R.354
- Salt bridges: A:R.339, A:R.344
- pi-Stacking: A:F.224, A:F.224
- pi-Cation interactions: A:R.354
ADP.10: 27 residues within 4Å:- Chain B: N.151, V.152, G.153, P.154, E.155, E.207, E.219, D.221, F.222, R.223, F.224, H.268, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: MG.7, MG.8, P3S.9
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:G.153, B:P.154, B:F.222, B:F.224, B:S.272, B:S.272, B:N.279, B:G.352, B:R.354, B:R.354, B:R.354
- Salt bridges: B:R.339, B:R.344
- pi-Stacking: B:F.224
- pi-Cation interactions: B:R.354
ADP.15: 26 residues within 4Å:- Chain C: N.151, V.152, G.153, E.155, E.207, E.219, D.221, F.222, R.223, F.224, H.268, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: MG.12, MG.13, P3S.14
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:G.153, C:E.155, C:E.207, C:E.207, C:F.224, C:S.272, C:S.272, C:N.279, C:G.352, C:R.354
- Salt bridges: C:R.339, C:R.344, C:R.354
- pi-Stacking: C:F.224, C:F.224
ADP.20: 27 residues within 4Å:- Chain D: N.151, V.152, G.153, P.154, E.155, E.207, E.219, D.221, F.222, R.223, F.224, H.268, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: MG.17, MG.18, P3S.19
14 PLIP interactions:14 interactions with chain D- Hydrogen bonds: D:G.153, D:G.153, D:E.207, D:F.224, D:S.272, D:N.279, D:N.351, D:R.354, D:R.354
- Salt bridges: D:R.339, D:R.344
- pi-Stacking: D:F.224, D:F.224
- pi-Cation interactions: D:R.354
ADP.22: 26 residues within 4Å:- Chain E: N.151, V.152, G.153, P.154, E.155, E.207, E.219, D.221, F.222, R.223, F.224, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: P3S.21, MG.24, MG.25
16 PLIP interactions:16 interactions with chain E- Hydrogen bonds: E:G.153, E:G.153, E:E.207, E:E.207, E:F.224, E:S.272, E:S.272, E:N.279, E:R.354, E:R.354, E:R.354
- Salt bridges: E:R.339, E:R.344
- pi-Stacking: E:F.224, E:F.224
- pi-Cation interactions: E:R.354
ADP.27: 26 residues within 4Å:- Chain F: N.151, V.152, G.153, E.155, E.207, E.219, D.221, F.222, R.223, F.224, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, P.346, N.351, G.352, T.353, R.354, E.356
- Ligands: P3S.26, MG.29, MG.30
17 PLIP interactions:17 interactions with chain F- Hydrogen bonds: F:G.153, F:G.153, F:E.155, F:E.207, F:E.207, F:F.224, F:N.270, F:S.272, F:N.279, F:G.352, F:R.354, F:E.356
- Salt bridges: F:R.339, F:R.344, F:R.354
- pi-Stacking: F:F.224, F:F.224
ADP.32: 27 residues within 4Å:- Chain G: N.151, V.152, G.153, P.154, E.155, E.207, E.219, D.221, F.222, R.223, F.224, H.268, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: P3S.31, MG.34, MG.35
14 PLIP interactions:14 interactions with chain G- Hydrogen bonds: G:P.154, G:E.207, G:F.222, G:F.224, G:S.272, G:S.272, G:N.279, G:R.354, G:R.354
- Salt bridges: G:R.339, G:R.344
- pi-Stacking: G:F.224, G:F.224
- pi-Cation interactions: G:R.354
ADP.37: 26 residues within 4Å:- Chain H: N.151, V.152, G.153, E.155, E.207, E.219, D.221, F.222, R.223, F.224, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356, R.358
- Ligands: P3S.36, MG.39, MG.40
15 PLIP interactions:15 interactions with chain H- Hydrogen bonds: H:G.153, H:G.153, H:E.207, H:F.224, H:N.270, H:S.272, H:S.272, H:N.279, H:G.352, H:R.354, H:R.354
- Salt bridges: H:R.339, H:R.344
- pi-Stacking: H:F.224, H:F.224
ADP.42: 27 residues within 4Å:- Chain I: N.151, V.152, G.153, E.155, E.207, E.219, D.221, F.222, R.223, F.224, H.268, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356, R.358
- Ligands: P3S.41, MG.44, MG.45
14 PLIP interactions:14 interactions with chain I- Hydrogen bonds: I:G.153, I:G.153, I:E.207, I:F.224, I:S.272, I:S.272, I:N.279, I:G.352, I:R.354, I:R.354
- Salt bridges: I:R.339, I:R.344
- pi-Stacking: I:F.224, I:F.224
ADP.47: 27 residues within 4Å:- Chain J: N.151, V.152, G.153, P.154, E.155, E.207, E.219, D.221, F.222, R.223, F.224, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, P.346, N.351, G.352, T.353, R.354, E.356
- Ligands: P3S.46, MG.49, MG.50
16 PLIP interactions:16 interactions with chain J- Hydrogen bonds: J:G.153, J:P.154, J:F.222, J:F.224, J:S.272, J:S.272, J:N.279, J:G.352, J:R.354, J:R.354, J:R.354
- Salt bridges: J:R.339, J:R.344
- pi-Stacking: J:F.224, J:F.224
- pi-Cation interactions: J:R.354
ADP.52: 25 residues within 4Å:- Chain K: N.151, V.152, G.153, E.155, E.207, E.219, D.221, F.222, R.223, F.224, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: P3S.51, MG.54, MG.55
16 PLIP interactions:16 interactions with chain K- Hydrogen bonds: K:G.153, K:G.153, K:E.207, K:F.224, K:N.270, K:S.272, K:S.272, K:N.279, K:G.352, K:R.354, K:R.354
- Salt bridges: K:R.339, K:R.344, K:R.354
- pi-Stacking: K:F.224, K:F.224
ADP.57: 26 residues within 4Å:- Chain L: N.151, V.152, G.153, P.154, E.155, E.207, E.219, D.221, F.222, R.223, F.224, N.270, Q.271, S.272, F.274, N.279, R.339, R.344, N.351, G.352, T.353, R.354, E.356
- Ligands: P3S.56, MG.59, MG.60
14 PLIP interactions:14 interactions with chain L- Hydrogen bonds: L:G.153, L:G.153, L:F.222, L:F.224, L:S.272, L:N.279, L:N.351, L:R.354, L:R.354, L:E.356
- Salt bridges: L:R.339, L:R.344
- pi-Stacking: L:F.224
- pi-Cation interactions: L:R.354
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schumacher, M.A. et al., M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation. Nat Commun (2023)
- Release Date
- 2023-11-15
- Peptides
- Glutamine synthetase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-12-mer
- Ligands
- 36 x MG: MAGNESIUM ION(Non-covalent)
- 12 x P3S: L-METHIONINE-S-SULFOXIMINE PHOSPHATE(Non-covalent)
- 12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schumacher, M.A. et al., M. mazei glutamine synthetase and glutamine synthetase-GlnK1 structures reveal enzyme regulation by oligomer modulation. Nat Commun (2023)
- Release Date
- 2023-11-15
- Peptides
- Glutamine synthetase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L