SMTL ID : 8tfo.2 (1 other biounit)

Structure of MKvar

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MEV: (R)-MEVALONATE(Non-covalent)

MEV.1: 12 residues within 4Å: Chain A: K.23, I.25, E.29, H.30, V.32, V.33, A.229, S.230, V.232, D.233, G.362, A.363 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.25, A:V.33 Hydrogen bonds: A:K.23, A:K.23, A:H.30, A:S.230 Water bridges: A:G.231, A:V.232

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: L.169, D.265, K.397, H.399 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.265, A:D.265, A:K.397

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: N.332 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Esquirol, L. et al., Characterization of novel mevalonate kinases from the tardigrade Ramazzottius varieornatus and the psychrophilic archaeon Methanococcoides burtonii. Acta Crystallogr D Struct Biol (2024)

Release Date

2024-03-13

Peptides

Mevalonate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mevalonate kinase

Related Entries With Identical Sequence