SMTL ID : 8tgb.1 (1 other biounit)

Crystal structure of root lateral formation protein (RLF) b5-domain from Oryza sativa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 15 residues within 4Å: Chain A: L.62, Y.72, H.76, P.77, G.78, M.82, L.83, K.85, L.94, F.95, Y.98, H.99, W.101, V.102, L.108 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:L.62, A:Y.72, A:P.77, A:P.77, A:M.82, A:K.85, A:L.94, A:F.95, A:Y.98, A:Y.98, A:Y.98, A:V.102, A:L.108 Salt bridges: A:H.99 pi-Stacking: A:F.95 Metal complexes: A:H.76, A:H.99

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.15, G.16, Y.17, S.18 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.16, A:S.18, A:S.18, A:S.18 Water bridges: A:Y.17, A:Y.17, A:Q.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benson, D.R. et al., The N-terminal intrinsically disordered region of Ncb5or docks with the cytochrome b 5 core to form a helical motif that is of ancient origin. Proteins (2024)

Release Date

2023-12-13

Peptides

root lateral formation protein (RLF): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

root lateral formation protein (RLF)

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