SMTL ID : 8thq.1

Nonamer RNA bound to hAgo2-PAZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

2 x C- G- U- G- A- C- U- C- U: RNA (5'-R(*CP*GP*UP*GP*AP*CP*UP*CP*U)-3')(Non-covalent)

C-G-U-G-A-C-U-C-U.1: 26 residues within 4Å: Chain A: H.46, R.52, Y.54, R.55, F.69, L.71, V.83, Y.86, F.87, R.90, H.91, Q.107, K.110, H.111, T.112, Y.113, L.114 Chain B: Q.49, K.51, R.52 Ligands: G-U-G-A-C-U-C-U.2, G-U-G-A-C-U-C-U.2, G-U-G-A-C-U-C-U.2, G-U-G-A-C-U-C-U.2, G-U-G-A-C-U-C-U.2, G-U-G-A-C-U-C-U.2 Protein-ligand interaction information (PLIP) not available C-G-U-G-A-C-U-C-U.2: 30 residues within 4Å: Chain A: Q.49, M.50, K.51, R.52, K.53 Chain B: K.41, H.46, M.50, R.52, Y.54, R.55, F.69, Y.86, F.87, R.90, H.91, Q.107, K.110, H.111, T.112, Y.113, L.114, Q.125 Ligands: C-G-U-G-A-C-U-C-U.1, C-G-U-G-A-C-U-C-U.1, C-G-U-G-A-C-U-C-U.1, C-G-U-G-A-C-U-C-U.1, C-G-U-G-A-C-U-C-U.1, C-G-U-G-A-C-U-C-U.1, C-G-U-G-A-C-U-C-U.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aluri, K.C. et al., Single-Stranded Hairpin Loop RNAs (loopmeRNAs) Potently Induce Gene Silencing through the RNA Interference Pathway. J.Am.Chem.Soc. (2024)

Release Date

2024-10-16

Peptides

Protein argonaute-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein argonaute-2