SMTL ID : 8thy.1

Yeast actin A167E mutant rabbit-like

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: D.6, G.8, S.9, G.10, M.11, K.13, Q.132, G.151, D.152, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301, K.331 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.9, A:G.10, A:M.11, A:Q.132, A:D.152, A:R.205, A:K.208, A:E.209, A:G.297 Salt bridges: A:K.13, A:K.13 pi-Stacking: A:F.301 ADP.3: 19 residues within 4Å: Chain B: D.6, G.8, S.9, G.10, M.11, K.13, Q.132, G.151, D.152, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301, K.331 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:S.9, B:G.10, B:M.11, B:Q.132, B:D.152, B:R.205, B:K.208, B:E.209, B:G.297 Salt bridges: B:K.13, B:K.13 pi-Stacking: B:F.301 ADP.5: 19 residues within 4Å: Chain C: D.6, G.8, S.9, G.10, M.11, K.13, Q.132, G.151, D.152, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301, K.331 Ligands: MG.6 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:S.9, C:G.10, C:M.11, C:Q.132, C:D.152, C:R.205, C:K.208, C:E.209, C:G.297 Salt bridges: C:K.13, C:K.13 pi-Stacking: C:F.301 ADP.7: 19 residues within 4Å: Chain D: D.6, G.8, S.9, G.10, M.11, K.13, Q.132, G.151, D.152, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301, K.331 Ligands: MG.8 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:S.9, D:G.10, D:M.11, D:Q.132, D:D.152, D:R.205, D:K.208, D:E.209, D:G.297 Salt bridges: D:K.13, D:K.13 pi-Stacking: D:F.301 ADP.9: 19 residues within 4Å: Chain E: D.6, G.8, S.9, G.10, M.11, K.13, Q.132, G.151, D.152, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301, K.331 Ligands: MG.10 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:S.9, E:G.10, E:M.11, E:Q.132, E:D.152, E:R.205, E:K.208, E:E.209, E:G.297 Salt bridges: E:K.13, E:K.13 pi-Stacking: E:F.301

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.6, G.8, K.13, Q.132 Ligands: ADP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.6, A:D.6 MG.4: 5 residues within 4Å: Chain B: D.6, G.8, K.13, Q.132 Ligands: ADP.3 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.6, B:D.6 MG.6: 5 residues within 4Å: Chain C: D.6, G.8, K.13, Q.132 Ligands: ADP.5 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.6, C:D.6 MG.8: 5 residues within 4Å: Chain D: D.6, G.8, K.13, Q.132 Ligands: ADP.7 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.6, D:D.6 MG.10: 5 residues within 4Å: Chain E: D.6, G.8, K.13, Q.132 Ligands: ADP.9 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.6, E:D.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Volkmann, N. et al., yeast actin A167E mutant rabbit-like. To Be Published

Release Date

2024-07-31

Peptides

Actin: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Actin

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