SMTL ID : 8ti3.1

Yeast actin wild type

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: G.8, S.9, G.10, M.11, K.13, G.151, D.152, G.177, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.9, A:G.10, A:M.11, A:D.152, A:D.152, A:K.208, A:G.297, A:M.300 Salt bridges: A:K.13, A:K.13 pi-Stacking: A:F.301 ADP.3: 17 residues within 4Å: Chain B: G.8, S.9, G.10, M.11, K.13, G.151, D.152, G.177, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301 Ligands: MG.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.9, B:G.10, B:M.11, B:D.152, B:D.152, B:K.208, B:G.297, B:M.300 Salt bridges: B:K.13, B:K.13 pi-Stacking: B:F.301 ADP.5: 17 residues within 4Å: Chain C: G.8, S.9, G.10, M.11, K.13, G.151, D.152, G.177, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301 Ligands: MG.6 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:S.9, C:G.10, C:M.11, C:D.152, C:D.152, C:K.208, C:G.297, C:M.300 Salt bridges: C:K.13, C:K.13 pi-Stacking: C:F.301 ADP.7: 17 residues within 4Å: Chain D: G.8, S.9, G.10, M.11, K.13, G.151, D.152, G.177, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301 Ligands: MG.8 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:S.9, D:G.10, D:M.11, D:D.152, D:D.152, D:K.208, D:G.297, D:M.300 Salt bridges: D:K.13, D:K.13 pi-Stacking: D:F.301 ADP.9: 17 residues within 4Å: Chain E: G.8, S.9, G.10, M.11, K.13, G.151, D.152, G.177, R.205, K.208, E.209, G.296, G.297, T.298, M.300, F.301 Ligands: MG.10 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:S.9, E:G.10, E:M.11, E:D.152, E:D.152, E:K.208, E:G.297, E:M.300 Salt bridges: E:K.13, E:K.13 pi-Stacking: E:F.301

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.6, G.8, K.13, Q.132 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 5 residues within 4Å: Chain B: D.6, G.8, K.13, Q.132 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain C: D.6, G.8, K.13, Q.132 Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.8: 5 residues within 4Å: Chain D: D.6, G.8, K.13, Q.132 Ligands: ADP.7 No protein-ligand interaction detected (PLIP) MG.10: 5 residues within 4Å: Chain E: D.6, G.8, K.13, Q.132 Ligands: ADP.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Volkmann, N. et al., yeast actin wild type. To Be Published

Release Date

2024-07-31

Peptides

Actin: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Actin