SMTL ID : 8tlv.1

Crystal structure of MBP and AF9 AHD fusion protein 4AQK in complex with peptidomimetic inhibitor 28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

monomer

Ligands

1 x HBX- PRO- VAL- DPP- XYC- I6O: peptidomimetic inhibitor 28(Non-covalent)

HBX-PRO-VAL-DPP-XYC-I6O.1: 19 residues within 4Å: Chain A: S.77, L.382, V.383, H.386, L.389, L.398, Q.399, V.402, I.413, T.414, N.415, T.416, T.417, F.418, D.419, F.420, D.421, L.422, C.423 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.382, A:V.383, A:H.386, A:L.398, A:L.398, A:Q.399, A:I.413, A:F.420, A:F.420, A:L.422, A:L.422 Hydrogen bonds: A:F.418, A:F.418, A:D.419, A:F.420, A:F.420, A:L.422

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.2: 16 residues within 4Å: Chain A: N.16, D.18, K.19, W.66, A.67, D.69, R.70, E.115, E.157, P.158, Y.159, F.160, W.234, M.334, W.344, R.348 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.66, A:R.70, A:R.70, A:E.157, A:Y.159, A:R.348 Water bridges: A:R.348

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.3: 2 residues within 4Å: Chain A: F.96, Q.329 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y. et al., Structural studies of intrinsically disordered MLL-fusion protein AF9 in complex with peptidomimetic inhibitors. Protein Sci. (2024)

Release Date

2024-05-29

Peptides

MBP and AF9 AHD fusion protein 4AQK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MBP and AF9 AHD fusion protein 4AQK