SMTL ID : 8tlw.1

Crystal structure of MBP and AF9 AHD fusion protein 3AQA in complex with peptidomimetic inhibitor 28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x HBX- PRO- VAL- DPP- XYC- I6O: peptidomimetic inhibitor 28(Non-covalent)

HBX-PRO-VAL-DPP-XYC-I6O.1: 20 residues within 4Å: Chain A: L.381, V.382, H.385, L.388, M.389, R.394, L.397, Q.398, I.400, V.401, I.412, T.413, T.415, T.416, F.417, D.418, F.419, D.420, L.421, C.422 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.381, A:V.382, A:H.385, A:L.388, A:L.388, A:L.397, A:Q.398, A:I.400, A:V.401, A:I.412, A:I.412, A:F.419, A:F.419, A:L.421 Hydrogen bonds: A:F.417, A:F.417, A:D.418, A:F.419, A:F.419, A:L.421 Water bridges: A:T.416, A:D.418

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.2: 14 residues within 4Å: Chain A: N.16, D.18, K.19, W.66, A.67, D.69, R.70, E.115, E.157, P.158, Y.159, F.160, W.234, W.344 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.66, A:R.70, A:R.70, A:E.157, A:Y.159 Water bridges: A:D.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y. et al., Structural studies of intrinsically disordered MLL-fusion protein AF9 in complex with peptidomimetic inhibitors. Protein Sci. (2024)

Release Date

2024-05-29

Peptides

MBP and AF9 AHD fusion protein 3AQA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MBP and AF9 AHD fusion protein 3AQA

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