SMTL ID : 8tm9.1

Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x bound to peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

1 x DAL- DPR- MLE- MEA- DAL- DPR- MLE- MEA: MC1(Non-covalent)

DAL-DPR-MLE-MEA-DAL-DPR-MLE-MEA.1: 24 residues within 4Å: Chain A: E.41, A.44, A.45, F.48, R.96, E.100, S.103, Q.104, F.107, L.111, F.159, I.162, V.163 Chain B: A.44, A.45, F.48, E.100, S.103, Q.104, F.107, H.155, F.159, I.162, V.163 23 PLIP interactions: 17 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:A.44, A:A.45, A:F.48, A:F.48, A:R.96, A:E.100, A:E.100, A:F.107, A:F.107, A:F.107, A:L.111, A:L.111, A:F.159, A:F.159, A:I.162, A:V.163, B:A.44, B:A.45, B:E.100, B:F.107, B:F.159, B:V.163 Hydrogen bonds: A:E.100

3 x POL: N-PROPANOL(Non-covalent)

POL.2: 3 residues within 4Å: Chain A: A.148, G.149, D.150 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.150 POL.6: 3 residues within 4Å: Chain B: G.208, D.209, K.212 No protein-ligand interaction detected (PLIP) POL.7: 5 residues within 4Å: Chain B: Q.178, E.179, K.180, A.181, Q.187 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain B: R.88 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.88, B:R.88 Salt bridges: B:R.88 SO4.4: 3 residues within 4Å: Chain B: R.15, R.88 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.88, B:R.88 Salt bridges: B:R.15, B:R.88 SO4.5: 4 residues within 4Å: Chain B: A.89, G.90, D.91, R.94 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.90, B:D.91 Salt bridges: B:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kennedy, M.A. et al., Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633_8x bound to peptide. To Be Published

Release Date

2024-12-11

Peptides

D_3_633_8x peptide bound: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D_3_633_8x peptide bound