SMTL ID : 8tms.1 (3 other biounits)

Crystal structure of bacterial pectin methylesterase PmeC2 from rumen Butyrivibrio

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: V.130, T.131, T.172 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: G.32, T.33, D.63, V.64, T.66 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.33, A:T.66, A:T.66 Water bridges: A:N.31 EDO.3: 5 residues within 4Å: Chain A: K.37, L.38, Y.39, F.40, Y.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.37, A:Y.39 EDO.4: 3 residues within 4Å: Chain A: D.113, R.115, L.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.115 Water bridges: A:D.113 EDO.5: 5 residues within 4Å: Chain A: D.142, D.185, F.188, W.266, W.291 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.185, A:D.185 EDO.6: 7 residues within 4Å: Chain A: E.153, R.154, E.155, G.158, F.159, W.266, R.267 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.154, A:E.155, A:E.155, A:W.266, A:R.267, A:R.267 Water bridges: A:R.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carbone, V. et al., Crystal Structures of Bacterial Pectin Methylesterases Pme8A and PmeC2 from Rumen Butyrivibrio . Int J Mol Sci (2023)

Release Date

2023-08-16

Peptides

Pectinesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pectinesterase

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