SMTL ID : 8tnl.1

CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain C: N.46 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.46 NAG.2: 3 residues within 4Å: Chain C: K.419, G.422, N.426 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:K.419 Hydrogen bonds: C:K.419, C:N.423, C:N.426 NAG.3: 2 residues within 4Å: Chain C: P.248, N.249 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:P.248 Hydrogen bonds: C:N.249 NAG.4: 3 residues within 4Å: Chain D: K.419, G.422, N.426 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:K.419 Hydrogen bonds: D:K.419 NAG.5: 1 residues within 4Å: Chain D: N.46 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain E: K.419, G.422, N.426 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.419 Hydrogen bonds: E:K.419 NAG.7: 1 residues within 4Å: Chain E: N.46 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, M. et al., Human neutralizing antibodies target a conserved lateral patch on H7N9 hemagglutinin head. Nat Commun (2024)

Release Date

2024-05-15

Peptides

H7.HK1 Neutralizing Antibody Heavy Chain: AFH
H7.HK1 Neutralizing Antibody Heavy Chain: BGI
Hemagglutinin: CDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

F
D

H
A

B
L

G
E

I
B

C
C

D
I

E
K

H7.HK1 Neutralizing Antibody Heavy Chain

H7.HK1 Neutralizing Antibody Heavy Chain

Hemagglutinin

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