SMTL ID : 8tnn.1 (1 other biounit)

Crystal structure of Epstein-Barr virus gH/gL/gp42 in complex with gp42 antibody A10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.36 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.44, E.47, D.48, S.51 Chain B: Q.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.51, A:S.51

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: I.532, N.533, T.647 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.647 NAG.3: 3 residues within 4Å: Chain B: A.18, E.20, N.21 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.18 Hydrogen bonds: B:E.20, B:E.20, B:N.21 NAG.4: 2 residues within 4Å: Chain B: N.30, S.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.30 NAG.5: 2 residues within 4Å: Chain C: N.141, T.149 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.141 NAG.6: 1 residues within 4Å: Chain C: N.61 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bu, W. et al., Epstein-Barr virus gp42 antibodies reveal sites of vulnerability for receptor binding and fusion to B cells. Immunity (2024)

Release Date

2024-03-27

Peptides

Envelope glycoprotein H: A
Envelope glycoprotein L: B
Glycoprotein 42: C
A10 light chain: D
A10 heavy chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

E
H

Envelope glycoprotein H

Envelope glycoprotein L

Glycoprotein 42

A10 light chain

A10 heavy chain

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