SMTL ID : 8toa.1

CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain B: D.1, V.3, N.26, Q.27 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Q.27 NAG.2: 4 residues within 4Å: Chain D: D.1, V.3, N.26, Q.27 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:Q.27 NAG.3: 4 residues within 4Å: Chain F: D.1, V.3, N.26, Q.27 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:Q.27 NAG.4: 1 residues within 4Å: Chain G: N.46 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.46 NAG.5: 4 residues within 4Å: Chain G: E.416, K.419, G.422, N.426 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:K.419 Hydrogen bonds: G:E.416 NAG.6: 1 residues within 4Å: Chain G: N.249 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.249 NAG.7: 4 residues within 4Å: Chain H: E.416, K.419, G.422, N.426 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:K.419 Hydrogen bonds: H:E.416, H:K.419 NAG.8: 2 residues within 4Å: Chain H: N.46, W.365 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:W.365 NAG.9: 1 residues within 4Å: Chain H: N.249 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain I: K.419, G.422, N.426 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:K.419 NAG.11: 1 residues within 4Å: Chain I: N.46 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morano, N.C. et al., CryoEM structure of H7 hemagglutinin from A/Shanghai2/2013 H7N9 in complex with a human neutralizing antibody H7.HK1. To Be Published

Release Date

2024-05-15

Peptides

H7.HK2 Neutralizing Antibody Heavy Chain: ACE
H7.HK2 Neutralizing Antibody Light Chain: BDF
Hemagglutinin: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
D

E
A

B
L

D
E

F
B

G
C

H
I

I
K

H7.HK2 Neutralizing Antibody Heavy Chain

H7.HK2 Neutralizing Antibody Light Chain

Hemagglutinin

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