SMTL ID : 8tor.1

ACE2-peptide 2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: T.61, Q.64, Q.84, N.86, S.89, H.178 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.64 Hydrogen bonds: A:S.89

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 2 residues within 4Å: Chain A: K.9, N.73 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: E.221, E.466, G.588, W.589 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.466, A:W.589 Water bridges: A:W.589 GOL.5: 6 residues within 4Å: Chain A: K.458, W.461, E.472, P.475, H.476, Y.596 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.472, A:H.476, A:Y.596 GOL.6: 5 residues within 4Å: Chain A: K.230, S.263, L.264, T.265, V.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.230, A:K.230, A:T.265

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: S.403, S.528, N.529 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.403, A:N.529

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain A: R.152, W.460, W.461, D.482 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.8: 3 residues within 4Å: Chain A: H.357, H.361, E.385 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.357, A:H.361, A:E.385, A:E.385, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedding, M.J. et al., Discovery of High Affinity Cyclic Peptide Ligands for Human ACE2 with SARS-CoV-2 Entry Inhibitory Activity. Acs Chem.Biol. (2024)

Release Date

2024-02-07

Peptides

Angiotensin-converting enzyme 2: A
Peptide 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Angiotensin-converting enzyme 2

Peptide 2

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