SMTL ID : 8tou.1

ACE2-peptide 2 complex crystal form 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: K.296, S.403, D.526, S.528, N.529 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.296

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: Q.64, Q.84, N.86 No protein-ligand interaction detected (PLIP) NAG.3: 1 residues within 4Å: Chain A: N.73 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain A: N.305 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.305

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.357, E.358, H.361, E.385 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.357, A:E.358, A:H.361, A:E.385

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: R.152, W.460, W.461, K.464, D.482 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedding, M.J. et al., Discovery of High Affinity Cyclic Peptide Ligands for Human ACE2 with SARS-CoV-2 Entry Inhibitory Activity. Acs Chem.Biol. (2024)

Release Date

2024-02-07

Peptides

Angiotensin-converting enzyme 2: A
Cyclic peptide 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme 2

Cyclic peptide 2

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