SMTL ID : 8tp7.1

H2 hemagglutinin (A/Singapore/1/1957) in complex with Sa-targeting Fab 4-1-1G03

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: N.179, T.181, W.250, T.252 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.250 NAG-NAG-FUC.2: 4 residues within 4Å: Chain B: N.179, T.181, W.250, T.252 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.250 NAG-NAG-FUC.3: 4 residues within 4Å: Chain C: N.179, T.181, W.250, T.252 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:W.250

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.26 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain A: R.37, N.38 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.37 Hydrogen bonds: A:N.38 NAG.6: 2 residues within 4Å: Chain A: K.291, N.300 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.291 Hydrogen bonds: A:N.300 NAG.7: 1 residues within 4Å: Chain B: N.26 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain B: R.37, N.38 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.37 Hydrogen bonds: B:N.38 NAG.9: 2 residues within 4Å: Chain B: K.291, N.300 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.291 Hydrogen bonds: B:N.300 NAG.10: 1 residues within 4Å: Chain C: N.26 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain C: R.37, N.38 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:R.37 Hydrogen bonds: C:N.38 NAG.12: 2 residues within 4Å: Chain C: K.291, N.300 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.291 Hydrogen bonds: C:N.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y.R. et al., Immune memory shapes human polyclonal antibody responses to H2N2 vaccination. Biorxiv (2023)

Release Date

2023-10-11

Peptides

Hemagglutinin: ABC
Heavy chain of monoclonal antibody 4-1-1G03: DEH
Light chain of monoclonal antibody 4-1-1G03: FGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

H
H

F
F

G
G

I
L

Hemagglutinin

Heavy chain of monoclonal antibody 4-1-1G03

Light chain of monoclonal antibody 4-1-1G03