SMTL ID : 8tp9.1

H2 hemagglutinin (A/Singapore/1/1957) in complex with medial-junction-targeting Fab 2-2-1G06

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.179, T.181, W.250, T.252 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.250 NAG-NAG.2: 4 residues within 4Å: Chain B: N.179, T.181, W.250, T.252 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.250 NAG-NAG.3: 4 residues within 4Å: Chain C: N.179, T.181, W.250, T.252 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:W.250

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.490, N.494 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.494 NAG.5: 2 residues within 4Å: Chain A: K.30, N.38 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain A: E.289, N.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.300 NAG.7: 2 residues within 4Å: Chain B: N.490, N.494 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.494 NAG.8: 2 residues within 4Å: Chain B: K.30, N.38 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain B: E.289, N.300 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.300 NAG.10: 2 residues within 4Å: Chain C: N.490, N.494 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.494 NAG.11: 2 residues within 4Å: Chain C: K.30, N.38 No protein-ligand interaction detected (PLIP) NAG.12: 2 residues within 4Å: Chain C: E.289, N.300 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y.R. et al., Immune memory shapes human polyclonal antibody responses to H2N2 vaccination. Cell Rep (2024)

Release Date

2023-10-11

Peptides

Hemagglutinin: ABC
Heavy chain of Fab 2-2-1G06: DEH
Light chain of Fab 2-2-1G06: FGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

H
H

F
F

G
G

I
L

Hemagglutinin

Heavy chain of Fab 2-2-1G06

Light chain of Fab 2-2-1G06

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