SMTL ID : 8tpc.1

Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

2 x JJC: N-[(1R)-2-(benzylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-N-[4-(2-chloroacetamido)phenyl]furan-2-carboxamide(Covalent)

JJC.1: 11 residues within 4Å: Chain A: T.25, L.27, C.44, T.45, S.46, M.49, N.142, G.143, S.144, C.145, H.163 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.25, A:L.27, A:N.142 Hydrogen bonds: A:G.143, A:C.145 Water bridges: A:N.142 JJC.2: 11 residues within 4Å: Chain B: T.25, L.27, C.44, T.45, S.46, M.49, N.142, G.143, S.144, C.145, H.163 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.25, B:L.27, B:N.142 Hydrogen bonds: B:G.143, B:C.145 Water bridges: B:N.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ashraf-Uz-Zaman, M. et al., Design, Synthesis, X-ray Crystallography, and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease. Acs Infect Dis. (2024)

Release Date

2024-01-24

Peptides

Non-structural protein 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Non-structural protein 7

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