SMTL ID : 8tph.1

Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

homo-dimer

Ligands

2 x JKL: (3R)-N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-3-hydroxybutanamide(Non-covalent)

JKL.1: 17 residues within 4Å: Chain A: T.25, L.27, H.41, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, D.187, R.188, Q.189 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:M.165, A:E.166, A:Q.189, A:Q.189 Hydrogen bonds: A:G.143, A:S.144, A:C.145, A:E.166 Water bridges: A:N.142, A:N.142 JKL.2: 17 residues within 4Å: Chain B: T.25, L.27, H.41, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, D.187, R.188, Q.189 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:M.165, B:E.166, B:Q.189, B:Q.189 Hydrogen bonds: B:G.143, B:S.144, B:C.145, B:E.166 Water bridges: B:N.142, B:N.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ashraf-Uz-Zaman, M. et al., Design, Synthesis, X-ray Crystallography, and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease. Acs Infect Dis. (2024)

Release Date

2024-01-24

Peptides

Non-structural protein 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Non-structural protein 7

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