SMTL ID : 8tu7.1

Cryo-EM structure of Apoferritin collected by EPU on Glacios at 2.5 Angstrom resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 8 residues within 4Å: Chain A: L.170, H.174 Chain E: L.170, H.174 Chain V: L.170, H.174 Chain W: L.170, H.174 3 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A, 1 interactions with chain W Metal complexes: E:H.174, A:H.174, W:H.174 FE.3: 8 residues within 4Å: Chain B: L.170, H.174 Chain H: L.170, H.174 Chain O: L.170, H.174 Chain P: L.170, H.174 4 PLIP interactions: 1 interactions with chain H, 1 interactions with chain O, 1 interactions with chain P, 1 interactions with chain B Metal complexes: H:H.174, O:H.174, P:H.174, B:H.174 FE.5: 8 residues within 4Å: Chain C: L.170, H.174 Chain G: L.170, H.174 Chain K: L.170, H.174 Chain T: L.170, H.174 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain C, 1 interactions with chain G, 1 interactions with chain T Metal complexes: K:H.174, C:H.174, G:H.174, T:H.174 FE.7: 8 residues within 4Å: Chain D: L.170, H.174 Chain F: L.170, H.174 Chain L: L.170, H.174 Chain R: L.170, H.174 4 PLIP interactions: 1 interactions with chain R, 1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain L Metal complexes: R:H.174, F:H.174, D:H.174, L:H.174 FE.13: 8 residues within 4Å: Chain I: L.170, H.174 Chain J: L.170, H.174 Chain M: L.170, H.174 Chain N: L.170, H.174 4 PLIP interactions: 1 interactions with chain I, 1 interactions with chain J, 1 interactions with chain N, 1 interactions with chain M Metal complexes: I:H.174, J:H.174, N:H.174, M:H.174 FE.22: 8 residues within 4Å: Chain Q: L.170, H.174 Chain S: L.170, H.174 Chain U: L.170, H.174 Chain X: L.170, H.174 4 PLIP interactions: 1 interactions with chain U, 1 interactions with chain Q, 1 interactions with chain S, 1 interactions with chain X Metal complexes: U:H.174, Q:H.174, S:H.174, X:H.174

24 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.28, A:E.63, A:E.63, A:H.66 ZN.4: 5 residues within 4Å: Chain B: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.28, B:E.63, B:E.63, B:H.66 ZN.6: 5 residues within 4Å: Chain C: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.28, C:E.63, C:E.63, C:H.66 ZN.8: 5 residues within 4Å: Chain D: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.28, D:E.63, D:E.63, D:H.66 ZN.9: 5 residues within 4Å: Chain E: E.28, E.63, H.66, V.111, Q.142 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.63, E:E.63, E:H.66 ZN.10: 5 residues within 4Å: Chain F: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.28, F:E.63, F:E.63, F:H.66 ZN.11: 5 residues within 4Å: Chain G: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:E.28, G:E.63, G:E.63, G:H.66 ZN.12: 5 residues within 4Å: Chain H: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:E.28, H:E.63, H:E.63, H:H.66 ZN.14: 5 residues within 4Å: Chain I: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:E.28, I:E.63, I:E.63, I:H.66 ZN.15: 5 residues within 4Å: Chain J: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:E.28, J:E.63, J:E.63, J:H.66 ZN.16: 5 residues within 4Å: Chain K: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:E.28, K:E.63, K:E.63, K:H.66 ZN.17: 5 residues within 4Å: Chain L: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:E.28, L:E.63, L:E.63, L:H.66 ZN.18: 5 residues within 4Å: Chain M: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:E.28, M:E.63, M:E.63, M:H.66 ZN.19: 5 residues within 4Å: Chain N: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:E.28, N:E.63, N:E.63, N:H.66 ZN.20: 5 residues within 4Å: Chain O: E.28, E.63, H.66, V.111, Q.142 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:E.63, O:E.63, O:H.66 ZN.21: 5 residues within 4Å: Chain P: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:E.28, P:E.63, P:E.63, P:H.66 ZN.23: 5 residues within 4Å: Chain Q: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:E.28, Q:E.63, Q:E.63, Q:H.66 ZN.24: 5 residues within 4Å: Chain R: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:E.28, R:E.63, R:E.63, R:H.66 ZN.25: 5 residues within 4Å: Chain S: E.28, E.63, H.66, V.111, Q.142 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.63, S:E.63, S:H.66 ZN.26: 5 residues within 4Å: Chain T: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:E.28, T:E.63, T:E.63, T:H.66 ZN.27: 5 residues within 4Å: Chain U: E.28, E.63, H.66, V.111, Q.142 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.63, U:E.63, U:H.66 ZN.28: 5 residues within 4Å: Chain V: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:E.28, V:E.63, V:E.63, V:H.66 ZN.29: 5 residues within 4Å: Chain W: E.28, E.63, H.66, V.111, Q.142 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:E.28, W:E.63, W:E.63, W:H.66 ZN.30: 5 residues within 4Å: Chain X: E.28, E.63, H.66, V.111, Q.142 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:E.63, X:E.63, X:H.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jia, L. et al., Cryo-EM structure of Apoferritin collected by EPU on Glacios at 2.5 Angstrom resolution. To Be Published

Release Date

2024-12-18

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Ferritin heavy chain

Related Entries With Identical Sequence