SMTL ID : 8tun.1

S. thermodepolymerans KpsM-KpsE in Glycolipid 1 state with rigid body fitted KpsT

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-8-mer

Ligands

1 x KJ9: (2R,5S,8S)-2,5-dihydroxy-5,10-dioxo-8-[(undecanoyloxy)methyl]-4,6,9-trioxa-5lambda~5~-phosphahenicosan-1-yl 3-deoxy-alpha-L-altro-oct-2-ulopyranosidonic acid

KJ9.1: 12 residues within 4Å: Chain C: W.48, H.56, R.92, R.97, R.190, Y.197, F.198 Chain D: Q.184, I.188, I.191, S.192, L.196 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:F.198, D:L.196 Hydrogen bonds: C:R.97, D:Q.184 Salt bridges: C:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuklewicz, J. et al., Molecular insights into capsular polysaccharide secretion. Nature (2024)

Release Date

2024-04-17

Peptides

ABC transporter ATP-binding protein: AB
Transport permease protein: CD
Capsular biosynthesis protein: EFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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ABC transporter ATP-binding protein

Transport permease protein

Capsular biosynthesis protein

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