SMTL ID : 8tvc.1

Crystal structure of rA3G-ssDNA-AA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.72, E.74, C.104, C.107 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.72, A:C.104, A:C.107, H2O.1 ZN.2: 4 residues within 4Å: Chain A: H.260, C.290, C.293 Ligands: PO4.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.260, A:C.290, A:C.293

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: H.219, T.221, H.260, W.287, S.288, P.289, C.290, C.293, Y.317 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.288, A:C.290 Water bridges: A:T.221, A:T.221, A:A.261 Salt bridges: A:H.219, A:H.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Molecular mechanism for regulating APOBEC3G DNA editing function by the non-catalytic domain. Nat Commun (2024)

Release Date

2024-11-06

Peptides

DNA dC->dU-editing enzyme APOBEC-3G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA dC->dU-editing enzyme APOBEC-3G

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