SMTL ID : 8two.1

AvrB bound with UDP and RIN4_T166-Rha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 14 residues within 4Å: Chain A: G.48, A.49, A.50, N.64, Y.67, M.71, R.101, F.115, R.268, G.269, S.270, A.271, A.272 Ligands: RAM.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.48, A:G.48, A:A.50, A:N.64, A:N.64, A:Y.67, A:G.269, A:A.271, A:A.272 Salt bridges: A:R.101, A:R.268 pi-Stacking: A:Y.67

1 x RAM: alpha-L-rhamnopyranose(Non-covalent)

RAM.2: 13 residues within 4Å: Chain A: T.127, Y.133, H.219, M.264, R.268, G.269, S.270, A.271, D.299, I.300, M.303 Chain B: T.19 Ligands: UDP.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.133 Hydrogen bonds: A:T.127, A:H.219, A:R.268, A:G.269, A:S.270, A:A.271, A:D.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, W. et al., Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4. Sci Adv (2024)

Release Date

2024-02-28

Peptides

Avirulence protein B: A
RPM1-interacting protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Avirulence protein B

RPM1-interacting protein 4

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