SMTL ID : 8tws.1

AvrB bound with UDP-rhamnose and RIN4 C-NOI motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AWU: [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate(Non-covalent)

AWU.1: 21 residues within 4Å: Chain A: G.48, A.49, A.50, N.64, Y.67, R.101, F.115, T.127, Y.133, H.219, M.264, R.268, G.269, S.270, A.271, A.272, E.275, D.299, I.300 Chain B: Y.18, T.19 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.48, A:A.50, A:N.64, A:Y.67, A:T.127, A:G.269, A:G.269, A:A.271, A:A.272, A:D.299, B:T.19, B:T.19 Salt bridges: A:R.101, A:R.268, A:R.268 pi-Stacking: A:Y.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, W. et al., Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4. Sci Adv (2024)

Release Date

2024-02-28

Peptides

Avirulence protein B: A
RPM1-interacting protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Avirulence protein B

RPM1-interacting protein 4

Related Entries With Identical Sequence