SMTL ID : 8twv.1

ELIC5 with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x 3CN: 3-AMINOPROPANE(Non-covalent)

3CN.1: 8 residues within 4Å: Chain A: E.77, I.79, E.131, P.132, F.133, L.178, F.188 Chain C: Y.38 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:L.178, A:F.188, C:Y.38 Hydrogen bonds: A:E.131 3CN.2: 8 residues within 4Å: Chain A: Y.38 Chain B: E.77, I.79, E.131, P.132, F.133, L.178, F.188 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.178, B:F.188, A:Y.38 Hydrogen bonds: B:E.131 3CN.3: 8 residues within 4Å: Chain C: E.77, I.79, E.131, P.132, F.133, L.178, F.188 Chain E: Y.38 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain E Hydrophobic interactions: C:L.178, C:F.188, E:Y.38 Hydrogen bonds: C:E.131 3CN.4: 9 residues within 4Å: Chain B: Y.38, R.91 Chain D: E.77, I.79, E.131, P.132, F.133, L.178, F.188 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:L.178, D:F.188, B:Y.38 Hydrogen bonds: D:E.131 3CN.5: 9 residues within 4Å: Chain D: Y.38, R.91 Chain E: E.77, I.79, E.131, P.132, F.133, L.178, F.188 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:L.178, E:F.188, D:Y.38 Hydrogen bonds: E:E.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalal, V. et al., Lipid nanodisc scaffold and size alter the structure of a pentameric ligand-gated ion channel. Nat Commun (2024)

Release Date

2024-03-27

Peptides

Gamma-aminobutyric-acid receptor subunit beta-1: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
B

D
D

E
C

Membrane

We predict this structure to be a membrane protein.
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Gamma-aminobutyric-acid receptor subunit beta-1

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