SMTL ID : 8tx0.2 (1 other biounit)

IRAK4 in complex with compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x VEU: ~{N}-(1-cyclopropyl-2-oxidanylidene-pyridin-3-yl)-2-(1-methyl-2-oxabicyclo[2.1.1]hexan-4-yl)-7-propan-2-yloxy-imidazo[1,2-a]pyrimidine-6-carboxamide

VEU.1: 17 residues within 4Å: Chain A: M.39, G.40, V.47, A.58, K.60, Y.109, V.110, Y.111, M.112, P.113, G.115, S.116, R.120, T.127, L.165, S.175, D.176 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.47, A:A.58, A:K.60, A:Y.109, A:Y.109, A:T.127, A:L.165 Hydrogen bonds: A:M.112 Water bridges: A:S.116, A:R.120

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: M.265, N.266 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.266 Water bridges: A:M.265 EDO.3: 6 residues within 4Å: Chain A: G.43, V.66, D.158, K.160, G.197, T.198 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.158, A:K.160 Water bridges: A:G.43, A:N.163, A:T.198

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: L.121, S.122, G.230, P.232 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfaffenbach, M. et al., Discovery of BIO-8169─A Highly Potent, Selective, and Brain-Penetrant IRAK4 Inhibitor for the Treatment of Neuroinflammation. J.Med.Chem. (2024)

Release Date

2024-06-26

Peptides

Interleukin-1 receptor-associated kinase 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Interleukin-1 receptor-associated kinase 4

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