SMTL ID : 8tyf.1

Plasmodium vivax PMV-WM06 inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.323, P.329, L.330, F.333 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.333 Hydrogen bonds: A:N.323, A:L.330 NAG.2: 1 residues within 4Å: Chain A: N.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.248

1 x T0F: (2E,4aR,7aS)-6-[(3M)-3-(2-chlorophenyl)pyridin-2-yl]-7a-(2,5-difluorophenyl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one(Non-covalent)

T0F.3: 22 residues within 4Å: Chain A: Y.29, I.46, D.48, G.50, S.51, S.53, S.55, Y.103, Q.105, S.106, Y.107, I.113, H.141, L.147, F.148, Q.151, V.156, D.281, G.283, S.284, I.407 Ligands: EDO.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.46, A:Q.105, A:I.113, A:L.147, A:F.148, A:V.156 Salt bridges: A:D.48, A:D.281 Halogen bonds: A:S.106

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: A.28, Y.29, G.283, S.284, T.285 Ligands: T0F.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.28, A:T.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hodder, A.N. et al., Plasmodium vivax PMX-XX inhibitor complex. To Be Published

Release Date

2024-08-28

Peptides

Plasmepsin V: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Plasmepsin V

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