SMTL ID : 8tz9.1

Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT2 conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

3 x XMO: N-hydroxy-5'-O-(2-methylpropanoyl)cytidine(Non-covalent)

XMO.1: 23 residues within 4Å: Chain A: F.305, V.309, L.310, V.313, F.316, G.361, Q.362, T.363, E.364, A.393, S.395, V.396, Y.400, L.467, I.471, L.475, N.539, E.540, F.541, F.584, N.586, S.589, I.592 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.309, A:V.313, A:V.396, A:I.471, A:F.584 Hydrogen bonds: A:Q.362, A:T.363, A:E.364, A:S.395, A:N.539, A:N.586, A:S.589 XMO.2: 23 residues within 4Å: Chain B: F.305, V.309, L.310, V.313, F.316, G.361, Q.362, T.363, E.364, A.393, S.395, V.396, Y.400, L.467, I.471, L.475, N.539, E.540, F.541, F.584, N.586, S.589, I.592 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.309, B:V.313, B:V.396, B:I.471, B:F.584 Hydrogen bonds: B:Q.362, B:T.363, B:E.364, B:S.395, B:N.539, B:N.586, B:S.589 XMO.3: 23 residues within 4Å: Chain C: F.305, V.309, L.310, V.313, F.316, G.361, Q.362, T.363, E.364, A.393, S.395, V.396, Y.400, L.467, I.471, L.475, N.539, E.540, F.541, F.584, N.586, S.589, I.592 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:V.309, C:V.313, C:V.396, C:I.471, C:F.584 Hydrogen bonds: C:Q.362, C:T.363, C:E.364, C:S.395, C:N.539, C:N.586, C:S.589

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, N.J. et al., Antiviral drug recognition and elevator-type transport motions of CNT3. Nat.Chem.Biol. (2024)

Release Date

2024-03-13

Peptides

Sodium/nucleoside cotransporter: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

Membrane

We predict this structure to be a membrane protein.
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Sodium/nucleoside cotransporter

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