SMTL ID : 8tzb.1

Structure of the C-terminal half of LRRK2 bound to GZD-824 (I2020T mutant)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x T3X: 4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}-3-[(1H-pyrazolo[3,4-b]pyridin-5-yl)ethynyl]benzamide(Non-covalent)

T3X.1: 26 residues within 4Å: Chain A: L.1885, F.1890, V.1893, A.1904, K.1906, E.1920, V.1923, L.1924, L.1927, L.1932, I.1933, L.1945, M.1947, E.1948, L.1949, A.1950, G.1953, I.1990, I.1991, Y.1992, R.1993, L.2001, I.2015, A.2016, D.2017, Y.2018 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.1885, A:V.1893, A:K.1906, A:V.1923, A:L.1924, A:L.1924, A:L.1927, A:I.1933, A:L.1945, A:M.1947, A:L.2001, A:D.2017, A:Y.2018 Hydrogen bonds: A:E.1920, A:A.1950, A:A.1950, A:D.2017 Salt bridges: A:D.2017, A:D.2017 pi-Stacking: A:F.1890 Halogen bonds: A:I.2015

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanz Murillo, M. et al., Inhibition of Parkinson's disease-related LRRK2 by type I and type II kinase inhibitors: Activity and structures. Sci Adv (2023)

Release Date

2023-12-06

Peptides

Leucine-rich repeat serine/threonine-protein kinase 2: A
designed ankyrin repeat proteins E11: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Leucine-rich repeat serine/threonine-protein kinase 2

designed ankyrin repeat proteins E11

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