SMTL ID : 8tzu.1 (2 other biounits)

OC43 S1b domain in complex with WNb 293 and WNb 317

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 2 residues within 4Å: Chain A: N.165, I.179 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 2 residues within 4Å: Chain A: P.107, N.110 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: L.83 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: H.151, I.200 Chain C: N.31 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:N.31, C:N.31, A:I.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adair, A. et al., Human coronavirus OC43 nanobody neutralizes virus and protects mice from infection. J.Virol. (2024)

Release Date

2024-05-01

Peptides

Spike protein S1: A
WNb 293: B
WNb 317: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
G

Spike protein S1

WNb 293

WNb 317

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