SMTL ID : 8u18.1

Cryo-EM structure of murine Thrombopoietin receptor ectodomain in complex with Tpo

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain A: L.263, N.324 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.263 NAG-NAG-BMA.2: 3 residues within 4Å: Chain B: L.263, K.264, N.324 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:K.264

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.153, T.155, A.156 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain A: N.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.92 NAG.6: 1 residues within 4Å: Chain B: N.92 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain B: D.150, S.151, S.152, N.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.150, B:N.153

2 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.5: 2 residues within 4Å: Chain A: R.428, W.440 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.428, A:R.428 MAN.8: 2 residues within 4Å: Chain B: R.428, W.440 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.428, B:R.428

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sarson-Lawrence, K.T.G. et al., Cryo-EM structure of the extracellular domain of murine Thrombopoietin Receptor in complex with Thrombopoietin. Nat Commun (2024)

Release Date

2024-02-07

Peptides

Thrombopoietin receptor,GCN4 isoform 1: AB
Thrombopoietin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Thrombopoietin receptor,GCN4 isoform 1

Thrombopoietin