SMTL ID : 8u2x.1 (1 other biounit)

Crystal Structure of NendoU (Uridylate-specific endoribonuclease, nsp15) from Betacoronavirus SARS-CoV-2 (H235A mutant)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-trimer

Ligands

3 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 3 residues within 4Å: Chain A: F.65, E.66, D.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.66, A:E.66 Water bridges: A:D.113, A:D.113 TRS.4: 3 residues within 4Å: Chain B: F.65, E.66, D.113 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.66, B:E.66 Water bridges: B:D.113, B:D.113 TRS.7: 3 residues within 4Å: Chain C: F.65, E.66, D.113 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.66, C:E.66 Water bridges: C:D.113, C:D.113

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.147, T.166, E.167 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.341, T.343 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: G.147, T.166, E.167 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: K.341, T.343 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain C: G.147, T.166, E.167 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: K.341, T.343 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal Structure of NendoU (Uridylate-specific endoribonuclease, nsp15) from Betacoronavirus SARS-CoV-2 (H235A mutant). To be published

Release Date

2023-09-13

Peptides

Uridylate-specific endoribonuclease nsp15: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Uridylate-specific endoribonuclease nsp15

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