SMTL ID : 8u2y.1

Solution structure of the PHD6 finger of MLL4 bound to TET3

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x GLY- VAL- GLY- GLY- SER- TRP- GLY- VAL- PHE: Methylcytosine dioxygenase TET3(Non-covalent)

GLY-VAL-GLY-GLY-SER-TRP-GLY-VAL-PHE.1: 17 residues within 4Å: Chain A: E.14, E.15, D.16, L.17, L.18, I.19, Q.20, R.22, W.27, E.38, V.41, E.42, A.45, D.46, E.47, G.48, F.49 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:E.14, A:L.17, A:L.17, A:I.19, A:V.41, A:E.42 Hydrogen bonds: A:D.16, A:D.16, A:L.18, A:L.18, A:Q.20, A:Q.20, A:Q.20, A:R.22, A:R.22, A:E.42, A:E.42, A:A.45, A:F.49

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.5, I.7, C.8, M.28, H.29, C.32 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.8, A:H.29, A:C.32 ZN.3: 6 residues within 4Å: Chain A: C.21, H.23, C.24, C.51, S.53, C.54 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:C.51, A:C.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becht, D.C. et al., MLL4 binds TET3. Structure (2024)

Release Date

2024-06-19

Peptides

Histone-lysine N-methyltransferase 2D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone-lysine N-methyltransferase 2D