SMTL ID : 8u32.2 (1 other biounit)

Crystal structure of PD-1 in complex with a Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: N.49, T.50, S.51, E.52, F.54, Q.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.51, A:Q.90 NAG.2: 1 residues within 4Å: Chain A: N.40 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, W.C. et al., Structure- and machine learning-guided engineering demonstrate that a non-canonical disulfide in an anti-PD-1 rabbit antibody does not impede antibody developability. Mabs (2024)

Release Date

2024-06-19

Peptides

Programmed cell death protein 1: A
Fab light chain: B
Fab heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Programmed cell death protein 1

Fab light chain

Fab heavy chain

Related Entries With Identical Sequence