SMTL ID : 8u3g.1

Structure of NAAG-bound Sialin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.1: 5 residues within 4Å: Chain A: Y.62, Y.211, Q.215 Ligands: ASP.2, GLU.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.211, A:Q.215 Hydrogen bonds: A:Y.62, A:Q.215

1 x ASP: ASPARTIC ACID(Non-covalent)

ASP.2: 7 residues within 4Å: Chain A: F.58, Y.62, Y.127, F.187, Y.211 Ligands: ACE.1, GLU.3 No protein-ligand interaction detected (PLIP)

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.3: 6 residues within 4Å: Chain A: S.419, H.422, L.423, L.434 Ligands: ACE.1, ASP.2 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:L.434 Hydrogen bonds: A:S.419 Salt bridges: A:H.306, A:H.422

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmiege, P. et al., Structure and inhibition of the human lysosomal transporter Sialin. Nat Commun (2024)

Release Date

2024-05-29

Peptides

Sialin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Sialin

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